University of Wisconsin–Madison

Publications & Resources

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Book

Kaplan, D. (2023). Bayesian Statistics for the Social Sciences (2nd Edition). New York: Guilford Press. (Order online from Guilford Press)

Supplementary materials: R code and data files are available from Guilford Press.

Papers


Chapters

  • Depaoli, S., Kaplan, D. & Winter, S. D. (2023). Foundations and extensions of Bayesian structural equation modeling. In Hoyle, R. (ed.), Handbook of Structural Equation Modeling, 2nd Edition. New York, Guilford Publications, Inc.
  • Kaplan, D. & Park, S. (2013). Analyzing international large-scale assessment data within a Bayesian framework. In L. Rutkowski, M. Von Davier, and D. Rutkowski (eds.), A Handbook of International Large-Scale Assessment: Background, Technical Issues, and Methods of Data Analysis. (pp 547-581). London: Chapman Hall/CRC Press. (PDF).
  • Kaplan, D. & Depaoli, S. (2013). Bayesian statistical methods. In T. D. Little (ed.), Oxford Handbook of Quantitative Methods. (pp 407-437) Oxford: Oxford University Press. (PDF). 
    Email ORSComms@education.wisc.edu to request the data for the chapter.
  • Kaplan, D. & Depaoli, S. (2012). Bayesian structural equation modeling. In R. Hoyle (ed.), Handbook of Structural Equation Modeling (pp. 650-673). New York: Guilford Publications, Inc. (PDF).

Software

ShinyBHB

Package “ShinyBHB” is a Shiny-based software program that can conduct Bayesian historical borrowing for single-level, multilevel, and longitudinal data.  

Two general types of historical borrowing methods are allowed: static and dynamic borrowing. Under static borrowing methods include no borrowing and power priors. For dynamic borrowing, the program presently only allows for  Bayesian dynamic borrowing. ShinyBHB runs the Stan programming language in the background and provides a full range of MCMC diagnostics and output. Results can be saved as .csv, .xls, or .tex files.

miBMA

Package “miBMA”: An R program to conduct multiple imputation using Bayesian model averaging.

The package makes use of the “mice” syntax (van Buuren, S. & Groothuis-Oudshoorn, K., 2011, Journal of Statistical Software, 45, 1-67) and conducts fully chained equations imputation under the normal model, where each cycle consists of an additional Bayesian model averaging step. 

BMASEM

Package “BMASEM”: An R program that expands the work of Madigan and his colleagues (Madigan & Raftery, 1994; Raftery, Madigan, & Hoeting, 1997) by considering a structural equation model as a special case of a directed acyclic graph (Pearl, 2009).

BMASEM searches the model space for sub-models and obtains a weighted average of the sub-models using posterior model probabilities. BMASEM version 2.1 is limited to the 24 paths in the model for the 4GM Ram computer system and continuous mediator and outcome variables.

BayesPSA

Package ‘BayesPSA’: An R program to conduct Bayesian propensity score analysis and covariate balance tests via MCMC or Bayesian model averaging.

This package is not on the CRAN. Please read the description file first. The program can be downloaded and installed using “install.packages() from local zip files”.


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